circRNA-miRNA结合圆形图
简介
circRNA可以通过吸附miRNA,调节miRNA靶基因的表达,即所谓的ceRNA机制。本图形象地展示了miRNA在circRNA上的结合位点。
数据说明
环状数据部分为3列:circRNA名字,起始坐标(默认1),终止坐标(即长度,这里改成自己的circRNA长度)。结合位置可以使用
miRanda预测
miRNA数据部分3列:miRNA名字,结合起始坐标,结合终止坐标。默认按照坐标排序,且
坐标无重叠,即miRNA坐标区段不连续
论文例子
Bioinformatics analysis of potential glioblastoma circular RNA sponge network
论文写作
Binding simulation between circRNA and miRNAs. circRNA was represented by outer green circle, and miRNAs were represented by inner red rectangle. The relative locations of miRNAs to circRNA represented the binding sites.
如何引用?
建议直接写网址。4600+篇
google学术,3700+篇
知网学术
正式引用:Tang D, Chen M, Huang X, Zhang G, Zeng L, Zhang G, Wu S, Wang Y.
SRplot: A free online platform for data visualization and graphing. PLoS One. 2023 Nov 9;18(11):e0294236. doi: 10.1371/journal.pone.0294236. PMID: 37943830.
方法章节:Heatmap was plotted by https://www.bioinformatics.com.cn (last accessed on 10 Oct 2024), an online platform for data analysis and visualization.
致谢章节:We thank Mingjie Chen (Shanghai NewCore Biotechnology Co., Ltd.) for providing data analysis and visualization support.